PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P20300_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 292aa    MW: 32396.8 Da    PI: 7.0566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P20300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-1299150155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+ +N  +++Lr+l+P++     ++ + a+i+  A+e++k+L+
  GSMUA_Achr5P20300_001  99 QRMTHIAVERNRRRVMNYHLATLRSLMPHS---FVQRGDQASIVGGAIEFVKELE 150
                            79***************************9...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-1390160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-996153No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1296152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.1798149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-1099150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-8104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSCGSLFSRQ MPFLQLLQGA MQAEEEMMDS SPAAEQLESC ITHLSESETR TVVHELPTMA  60
ATTGLIVRSA AATCSGERKK RMRRRPASAS KSAEKEESQR MTHIAVERNR RRVMNYHLAT  120
LRSLMPHSFV QRGDQASIVG GAIEFVKELE QHLISLRAQK RLQASVSVSS RSDDNDKCSA  180
PALHDGFFTS SQYMGYSQSQ EEDATAVDVE ATLVQGHVNL KVAAQRRRGQ LVRAMAAIEE  240
LRLSILHLNI TTLEPPSILY SINLKMEEEC KLGTADEVAT AVHQIFSYIN TS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17685ERKKRMRRRP
299110RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402067.10.0PREDICTED: transcription factor bHLH57-like
SwissprotO810373e-62BH070_ARATH; Transcription factor bHLH70
TrEMBLM0T0590.0M0T059_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P20300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-58bHLH family protein